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Scaling behavior in measured keystroke time series from patients with Parkinson’s disease
, Article European Physical Journal B ; Volume 93, Issue 7 , July , 2020 ; Taghavi Shahri, F ; Taghavi Shahri, S. M ; Rahimi Tabar, M. R ; Sharif University of Technology
Springer
2020
Abstract
Abstract: Parkinson has remained as one of the most difficult diseases to diagnose, as there are no biomarkers to be measured, and this requires one patient to do neurological and physical examinations. As Parkinson is a progressive disease, accurate detection of its symptoms is a crucial factor for therapeutic reasons. In this study, we perform Multifractal Detrended Fluctuation Analysis (MFDFA) on measured keystroke time series for three different categories of subjects: healthy, early-PD, and De-Novo patients. We have observed different scaling behavior in terms of multifractality of the measured time series, which can be used as a practical tool for diagnosis purposes. Additionally, the...
The Use of Social Marketing Approach to Motivate Schools to Teach Students Systematic Thinking
, M.Sc. Thesis Sharif University of Technology ; Mashayekhi, Alinaghi (Supervisor)
Abstract
One of Iran’s most important priorities at present is the development of the human resources and one of the most important skills of this human resource is decision making and problem solving. During the past few years, there have been numerous criticisms about the educational system in Iran without a substantial solution being offered to replace the existing approach. Aseman Group has been trying to promote system thinking in children. In Aseman, they believe that system thinking is one probable solution in order to develop thinking, decision making and problem solving skills in our human resource at early age. However, one of the many problems facing this group, is the resistance shown by...
3d Design of a Microfluidic Chip for Anticancer Drugs Screening
, M.Sc. Thesis Sharif University of Technology ; Mashayekhan, Shohreh (Supervisor) ; Saadatmand, Maryam (Supervisor)
Abstract
Nowadays, advanced and inexpensive pre-clinical methods for investigating the effects of anti-cancer drugs are expanding. One of the latest three-dimensional laboratory modeling for evaluating the effects of drugs is the use of tumor-on-chip technology, which actually models the physiological system of the body through three-dimensional scaffolds, multicellular cultures, and shaped vascular systems. In this study, three-dimensional culture of cancer cells was performed in the form of spheroids. A chip of U-shaped microstructures with and without gaps was used to trap cells and form cancer spheroids. We simulated the simultaneous effect of drug and oxygen concentration distribution inside the...
Guarding a Terrain by Watchtowers
, M.Sc. Thesis Sharif University of Technology ; Zarei, Alireza (Supervisor)
Abstract
Guarding terrains(or covering terrains) is a well known problem in the field of visibility and computational geometry. The aim of this problem is to select a minimal set of elements (such as points on terrain, line segment, points above terrain ,...),as guard set, such that every point of the terrain is visible from at least one member of the guard set.
This problem was introduced in 2-dimensions as art gallery problem. Various types of this problem have been defiend and studied in the literature. Guarding 3-dimensional terrains is an example of this problem. In 3-dimentional case, the guarded terrain can be modeled with triangulated irregullar network(TIN), as one of the surface models,...
This problem was introduced in 2-dimensions as art gallery problem. Various types of this problem have been defiend and studied in the literature. Guarding 3-dimensional terrains is an example of this problem. In 3-dimentional case, the guarded terrain can be modeled with triangulated irregullar network(TIN), as one of the surface models,...
CTM Effect on Two-Echelon Supply Chain Performance and Reducing Bullwhip Effect Using Simulation
, M.Sc. Thesis Sharif University of Technology ; Haji, Alireza (Supervisor)
Abstract
In recent decades with the increasing in competitive business environment and globalization of markets, Optimization gone beyond the level of organization and reached the level of supply chain. So far, numerous models of how organizations collaborate together have been developed. In this regard, CPFR model can be regarded as one of the most popular methods. Articles published after 2000 showed the lack of CPFR model and to overcome this, a concept known as Collaborative Transportation Management (CTM) was introduced. In this model, carriers are considered as strategic member and a lot of information gets shared with them. Because of the emerging of this concept, A little research has been...
Assessment of Multivariate Chemometric Methods Combined with Comprehensive Two-dimensional Gas Chromatography Towards Determination of Aromatic Compounds in Complex Samples
, M.Sc. Thesis Sharif University of Technology ; Parastar Shahri, Hadi (Supervisor)
Abstract
In recent years, comprehensive two-dimensional gas chromatography (GC×GC) have emerged as a powerful technique suitable for the separation of complex mixtures because of their higher resolution and higher peak capacity. The invention of GC×GC is a milestone development in chromatographic history. However, one of the main challenges in chromatography and especially in GC×GC is related to the difficulty on the analysis and interpretation of the enormous amount of data obtained in these cases. In this context, resolution, identification and quantification of target compounds in the presence of interferences are issues which have a great importance and not totally solved yet. The present...
Development and Application of Independent Component Analysis Method for Evaluation of Complex Chromatographic Data
, M.Sc. Thesis Sharif University of Technology ; Parastar Shahri, Hadi (Supervisor)
Abstract
In recent years, chromatographic technique as one of the most important analytical techniques have been developed for the analysis of complex samples. Hyphenated chromatographic techniques such as liquid or gas chromatography combine separation and spectroscopic detection technique to exploit the advantages of both and they have attracted attention of chemists to analyze complex mixtures. However, inadequate separation challenges still exist especially in the analysis of complex samples. Therefore, two-dimensional chromatographic systems such as comprehensive two-dimensional gas chromatography-mass spectrometry (GC×GC-MS) have been proposed for the analysis of complex samples due to their...
Development and Application of Multivariate Calibration Methods Combined with Gas Chromatography for Simultaneous Determination of Organophosphorous Pesticides in Complex Matrices
, M.Sc. Thesis Sharif University of Technology ; Parastar Shahri, Hadi (Supervisor)
Abstract
In this study, a new strategy based on chemometrics and extraction method of Quick, Easy, Cheap, Effective, Rugged and Safe (QuEChERS) combined with dispersive liquid–liquid micro-extraction (DLLME) in addition gas chromatography-flame ion detector (GC-FID) has been developed for the determination of ten pesticides in complex samples (such as tap water and milk).In this regard, experiments were designed, modeled and optimum condition was achieved by using central composite design (CCD), backward multiple linear regression (MLR) and Nelder-Mead simplex optimization. On this matter, 36 experiments for 5 extraction factors in 5 levels were generated. Also, multi-response optimization using...
Development of Chemometric Methods Combined with Isotope Ratio Mass Spectrometry (IRMS) for Isotope Pattern Recognition and Adulteration Detection in Foods
, M.Sc. Thesis Sharif University of Technology ; Parastar Shahri, Hadi (Supervisor)
Abstract
The purpose of this study was to investigate the capability of Isotopic Ratio Mass Spectrometry (IRMS) in the detection of four common natural plant frauds in saffron, namely Marigold flower, Safflower, Rubia and Saffron Style. For this purpose, first natural saffron isotopes were analyzed and used to investigate fingerprints of carbon-13 and nitrogen-15 isotopes by Elemental Analyzer Isotopic Ratio Mass Spectrometry (EA-IRMS) and carbon-13 isotopic ratio of saffron components by Gas Chromatography Isotopic Ratio Mass Spectrometry (GC-C-IRMS). Then, according to the isotopic behavior of the original saffron, they were sampled to form a mixture of saffron that is representative of the...
The Pattern Recognition Methods in Combination with Nuclear Magnetic Resonance (NMR)Spectroscopy in Order to Develop a Metabolomic Approach to Breast Cancer Prognosis
, M.Sc. Thesis Sharif University of Technology ; Parastar Shahri, Hadi (Supervisor)
Abstract
The emerging field of “metabolomics” focuses on investigating into the changes of low-molecular-weight – less than 1500 Daltons – molecules, or metabolites, and it has significantly developed in the field of detecting diseases, particularly cancer in recent years. Regarding the importance of breast cancer (BC), especially among women, developing simple, trusted metabolic approaches are crucial. In the present work, utilizing multivariate class-modelling techniques combined to nuclear magnetic resonance (NMR) in order to predict breast cancer based on analyzing the blood serum of healthy and BC patients is presented. To do so, using 42 blood samples, 18 BC patients and 24 healthy individuals,...
Determination of Saffron Adulteration Thorough the Package Using Hyperspectral Imaging and Chemometric Techniques
, M.Sc. Thesis Sharif University of Technology ; Parastar Shahri, Hadi (Supervisor)
Abstract
These days, food authenticity has become a major challenge because food health directly affects human health. The importance of authenticity is highlighted when we are faced with foods with higher nutritional and economic value. Saffron is an important example of spices because in addition to having food coloring and flavoring properties, it also has numerous health benefits, but it has limited production and high price. Therefore, with the options available and cheaper to be replaced. Thus, among the various spices, cheating in saffron has the fourth place. Hyperspectral Imaging (HSI) has been developed for food safety industrial applications. This technique combines spectroscopy and...
Handheld NIR Spectroscopy and Hyperspectral Imaging in Combination with Chemometrics for Determination of Active Pharmaceutical Ingredient in Warfarin, Metformin and Nitroglycerin
, M.Sc. Thesis Sharif University of Technology ; Parastar Shahri, Hadi (Supervisor)
Abstract
With the expansion of the pharmaceutical market and the increasing likelihood of distributing substandard medicines, it is necessary to develop methods for rapid, timely, and non-destructive analysis. These methods should enable the assessment of qualitative features such as the amount of active substance and the homogeneous distribution of materials at various stages of drug manufacturing. In this regard, numerous studies have been conducted using spectroscopy and hyperspectral imaging, particularly in the visible and near-infrared regions. The challenge here is that active ingredients in medicine and excipients look very similar in this region. They're usually white powders, and the weak...
Conventional and Hyperspectral Imaging Combined with Chemometric Techniques for Rice Authentication
, M.Sc. Thesis Sharif University of Technology ; Parastar Shahri, Hadi (Supervisor)
Abstract
Fast, non-destructive and reliable methods for food authentication purposes have been deemed important in recent years. The hyperspectral imaging technique (HSI) is a powerful method in this field, allowing the study of different features such as size, color, texture. Comprehensive interpretation is crucial, and utilizing chemometric methods enhances data interpretation. Rice is a vital and strategic food source for nearly half of the world, with Asia, particularly Iran, being a leading producer and exporter. Various types of rice fraud exist, including the mixing of high-quality and low-quality varieties, sold at a high cost. The present project aims to determine the geographical origin and...
Hyperspectral Imaging Combined with Chemometric Techniques for Diagnosis of Breast Cancer
, M.Sc. Thesis Sharif University of Technology ; Parastar Shahri, Hadi (Supervisor)
Abstract
Breast cancer is one of the most known types of cancer. About every eight women, one woman will suffer from one of the types of malignant tissues during her life. Diagnosing this type of cancer in the early stages is an important matter and can lead to full recovery. Therefore, one of the challenges in this field is the emergence of a fast method with high sensitivity to diagnose this disease in its early stages. Currently, biopsy is the standard method for breast cancer diagnosis. However, there are some drawbacks to this method. For instance, in order to detect the tumor margin, all breast tissue must be removed, which causes all breast tissue, including healthy tissues, to be removed....
Improving the Multivariate Classification Results of Hyperspectral Imaging Data by Considering Spatial Information Using Deep Learning Methods
, M.Sc. Thesis Sharif University of Technology ; Parastar Shahri, Hadi (Supervisor)
Abstract
Hyperspectral imaging (HSI) has gained attention because it offers many benefits: it requires minimal sample preparation, is non-destructive, highly accurate, and provides detailed spatial information. However, the large amount of data it generates leads to high computational costs. To handle this and extract useful information from HSI data, various machine learning and chemometrics methods have been developed in recent years. This study aims to use a U-shaped deep neural network (U-Net) to classify hyperspectral imaging data in the 400-1000 nm wavelength range. The goal is to authenticate and detect adulterations in saffron, a valuable product. This method preserves the spatial information...
Model Checking of Stochastic Activity Networks
, M.Sc. Thesis Sharif University of Technology ; Movaghar, Ali (Supervisor)
Abstract
Modeling and performance evaluation of the real time distributed systems is a significant problem. Stochastic activity network is one of the high level models used for this purpose. This network is an extension of generalized stochastic Petri net which is more powerful and flexible than other Petri net extensions. Checking the satisfiability of properties such as performance, dependability and user's expected properties is considerable in these models. Thus, using the approaches and generating modeling and model checking tools with the mentioned purpose is attractive. A model checker automatically checks the correctness of the system behaviors as properties against the model by getting the...
Fabrication of Thick Scaffold with Microfluidic Channels by Bioprinter
, M.Sc. Thesis Sharif University of Technology ; Saadatmand, Maryam (Supervisor)
Abstract
Cardiovascular diseases are among the leading causes of death worldwide. For instance, in 2015, almost 31% of the world’s mortality rate was due to these causes. One of these diseases is cardiac coronary vessels’ occlusion which leads to the insufficient blood supply to the heart tissue and cardiomyocytes death after Myocardial Infarction (MI). After MI, a hierarchy of events in the heart tissue changes heart muscle and forms cardiac fibrosis. This fibrotic tissue does not have the native one’s properties and function, so it will cause cardiac arrest and patient death. Therefore, it is obvious that vascular network plays a crucial role in the heart function. The importance of cardiac...
Robust Estimation and Control of a Planet Lander
, M.Sc. Thesis Sharif University of Technology ; Kiani, Maryam (Supervisor)
Abstract
This study has focused on the important problem of landing on a planet as an important current and future space mission. In this regard, dynamics modeling and integrated state estimation and control problems have been investigated in different views. To this aim, first a novel concurrent representation for translational and rotational kinematics has been developed based on the extension of modified Rodrigues parameters to dual space. This parameter set, called dual modified Rodrigues parameters (DMRP), is then utilized to establish an integrated roto-translational dynamic. The proposed DMRP-based kinematics and dynamics have been verified via comparison to traditional methods of...
Optimal Control of Unknown Interconnected Systems via Distributed Learning
, M.Sc. Thesis Sharif University of Technology ; Babazadeh, Maryam (Supervisor)
Abstract
This thesis addresses the problem of optimal distributed control of unknown interconnected systems. In order to deal with this problem, a data-driven learning framework for finding the optimal centralized and the suboptimal distributed controllers has been developed via convex optimization.First of all, the linear quadratic regulation (LQR) problem is formulated into a nonconvex optimization problem. Using Lagrangian duality theories, a semidefinite program is then developed that requires information about the system dynamics. It is shown that the optimal solution to this problem is independent of the initial conditions and represents the Q-function, an important concept in reinforcement...
Utilizing Gaussian Processes to Learn Dynamics of Unknown Torques Acting on a Spacecraft
, M.Sc. Thesis Sharif University of Technology ; Kiani, Maryam (Supervisor)
Abstract
Accurate and fast attitude estimation of a rigid body plays an essential role in the performance of a vehicle’s control system, especially aerospace vehicles. Ample works have been done to increase the accuracy and speed of the attitude estimation process, but all have been developed according to a model-based approach. This approach assumes that the torques acting on the body have a known dynamical model that is used for the attitude estimation. The purpose of the present research is to estimate the attitude via a model-free approach, i. e. dynamics of the torques acting on the body are no longer assumed to be known, and its learning is the next step. Thus, the problem formulation of this...