Sharif Digital Repository

The existence of nonrandom patterns in codon assignments is supported by many statistical and biochemical studies. The canonical genetic code is known to be highly efficient in minimizing the effects of mistranslation errors and point mutations. For example, it is known that when an error induces the conversion of an amino acid to another, the biochemical properties of the resulting amino acid are usually very similar to that of the original. Prior studies include many attempts at quantitative estimation of the fraction of randomly generated codes which, based upon load minimization, score higher than the canonical genetic code. In this study, we took into consideration both the relative... 

Statistical and biochemical studies have revealed nonrandom patterns in codon assignments. The canonical genetic code is known to be highly efficient in minimizing the effects of mistranslational errors and point mutations, since it is known that, when an amino acid is converted to another due to error, the biochemical properties of the resulted amino acid are usually very similar to those of the original one. In this study, we have taken into consideration both relative frequencies of amino acids and relative gene copy frequencies of tRNAs in genomic sequences in order to introduce a fitness function which models the mistranslational probabilities more accurately in modern organisms. The... 

Statistical and biochemical studies have revealed non-random patterns in codon assignments. The canonical genetic code is known to be highly efficient in minimizing the effects of mistranslation errors and point mutations, since it is known that when an amino acid is converted to another due to error, the biochemical properties of the resulted amino acid are usually very similar to those of the original one. In this study, using altered forms of the fitness functions used in the prior studies, we have optimized the parameters involved in the calculation of the error minimizing property of the genetic code so that the genetic code outscores the random codes as much as possible. This work also... 

Prediction of reaction yield as the most important characteristic process of a slurry polymerization industrial process of propylene has been carried out. Stacked neural network as an effective method for modeling of inherently complex and nonlinear systems-espe-cially a system with a limited number of experimental data points-was chosen for yield prediction. Also, effect of operational parameters on propylene polymerization yield was modeled by the use of this method. The catalyst system was Mg(OEt)2/DIBP/TiCl 4/PTES/AlEt3, where Mg(OEt)2, DIBP (diisobutyl phthalate), TiCl4, PTES (phenyl triethoxy silane), and triethyl aluminum (AlEt3) (TEAl) were employed as support, internal electron... 

The properties of Functionally Graded Materials (FGM) are characterized by gradual variation of volume fraction of their constituents or phases over the thickness direction. They are normally ceramic in one side and metal in the other side. This kind of material has been employed as thermal barrier and also as coatings in many applications including turbine blades. Thermal stress behavior of FGMs is normally studied by simulating the material as a composite laminate where the properties ofeach layer are found by averaging the properties and volume fraction of FGM constituents through the thickness of the layer. However, it should be mentioned that the grains of FGM constituents are usually... 

The electrodeposition of nickel was studied using electrochemical techniques in different electrolytes and various agents. The voltammetry analysis clearly showed that the electrodeposition of nickel was a diffusion-controlled process associated with a typical nucleation process. The current transients represented instantaneous nucleation with a typical three-dimensional (3D) growth mechanism. Scharifker's equations were derived for instantaneous and progressive nucleation of the 3D growth of the spherical centers under diffusion-controlled condition. The number of nucleation sites increased with the increment in overpotential and Ni 2+ concentration. Atomic force microscopy was used to... 

Nickel nanostructure thin films were electrodeposited on copper plates to investigate the fractal study. Scharifker's equations were derived for instantaneous and progressive nucleation and 3D growth of hemispherical centres under diffusion-controlled condition to calculate in situ change of fractal dimension of surface. It was assumed that the layer could be formed completely when fractal dimension of surface inclined to 2. Moreover, the fractal analysis of atomic force microscopy (AFM) images has confirmed the presumed model. Also, the power values of power spectral density (PSD) of the AFM images were determined using fast Fourier transform (FFT) algorithms. The PSD plots are approximated... 

Overwhelming number of control laws has been studied for control of robot manipulators with rigid links and joints. However controllers designed under this assumption may not accurately control the manipulator link due to visco-elastic properties that appear in the link behavior. In this study, a novel approach for robust control of a single-link manipulator is presented to force the link to have rigid motions, while it has visco-elastic behavior. In this regard, initially robot dynamics is extracted, followed by the design of four appropriate controllers through the loop-shaping approach. The obtained model is first represented in state space, however later converted to transfer function... 

Pure polypyrrole (PPy), PPy/Al2O3 and PPy/SiO2 nanocomposites synthesized galvanostatically using different polymerization charges. Electrochemical impedance measurements of pure polypyrrole revealed that the film thickness affected the impedance responses. The characteristic frequencies vs. film thickness that obtained using Cole-Cole plots showed that electrodeposition mechanism changed from 3D to 1D after nuclei overlapping for pure PPy. Analysis of the nanocomposites impedance spectrums revealed no changes during the film growth, i.e. deposition continues 3D even after nuclei overlapping. Scanning electron microscopy (SEM) confirmed the impedance results and showed that the morphology of... 

In this research, we investigate a three-stage supply chain with one supplier, several manufacturers and multiple retailers where the supplier provides a common raw material to each manufacturer, who in turn uses a single stage production facility to convert it into final products that are delivered at fixed lot sizes to retailers. An integrated economic procurement, production, and delivery model is developed whose objective is to find the common production cycle length, production sequences of final products at manufacturers and delivery frequencies of final products to retailers minimizing the total costs of considered supply chain. We propose an analytical solution procedure and an...