Loading...
Search for:
yarian--abolfazl
0.24 seconds
Total 119 records
Design and Implementation of GPU-based MLOps Cloud Platform
,
M.Sc. Thesis
Sharif University of Technology
;
Hashemi, Matin
(Supervisor)
Abstract
In the current era, artificial intelligence and machine learning have become vital and widely used technologies across various industries. These technologies enable companies and organizations to optimize processes, predict trends, and uncover hidden patterns in data with high accuracy and speed. However, fully leveraging the capabilities of AI and ML requires the effective and efficient deployment of ML models in production environments. MLOps, a combination of DevOps and ML concepts, aids in managing the lifecycle of ML models from development to deployment and maintenance. In this research, due to international sanctions and limited access to external services such as Google Vertex AI,...
Enzymatic formation of recombinant antibody-conjugated gold nanoparticles in the presence of citrate groups and bacteria
, Article Catalysts ; Volume 12, Issue 9 , 2022 ; 20734344 (ISSN) ; Ebrahimipour, G ; Bandehpour, M ; Akhavan, O ; Yarian, F ; Sharif University of Technology
MDPI
2022
Abstract
With the spread of deadly diseases worldwide, the design of rapid tests to identify causative microorganisms is necessary. Due to the unique properties of gold nanoparticles, these nanoparticles are used in designing rapid diagnostic tests, such as strip tests. The current study aimed to investigate the ability of gold nanoparticles to bind to single-chain variable fragment antibodies. In this study, the biological and chemical methods included Escherichia coli TOP-10 and the Turkevich method to synthesize the gold nanoparticles, respectively. Then, the effect of synthetic nanoparticles on their capability of binding to recombinant antibodies was assessed by agarose gel and UV-vis...
Neisseria meningitidis detection by coupling bacterial factor H onto Au/scFv antibody nanohybrids
, Article Applied Physics A: Materials Science and Processing ; Volume 129, Issue 6 , 2023 ; 09478396 (ISSN) ; Ebrahimipour, G ; Bandehpour, M ; Akhavan, O ; Yarian, F ; Sharif University of Technology
Springer Science and Business Media Deutschland GmbH
2023
Abstract
Neisseria meningitides is one of the causative agents of the deadly bacterial meningitis disease, and its rapid diagnosis is highly required. In this study, at first, a specific single-chain variable fragment (scFv) antibody-conjugated Au NPs with average size of ~ 20 nm and surface plasmon resonance absorption peak at ~ 530 nm in wavelength were synthesized. Then, the NPs were loaded on nitrocellulose membrane pads for designing a selective lateral flow immunoassay test strip which is sensitive to the factor H protein of Neisseria meningitidis. The results showed a minimum detectable bacterial concentration of 0.5 μg/mL in only three minutes. The molecular structure of the scFv antibody-Au...
SOEing PCR/Docking optimization of protein A-G/scFv-Fc-bioconjugated Au nanoparticles for interaction with meningitidis bacterial antigen
, Article Catalysts ; Volume 13, Issue 5 , 2023 ; 20734344 (ISSN) ; Ebrahimipour, G ; Bandehpour, M ; Akhavan, O ; Yarian, F ; Sharif University of Technology
MDPI
2023
Abstract
Recent advances in the use of gold nanoparticles (Au NPs)/antibody conjugations in nanomedicine have increased the need to optimize the synthesis conditions and surface functionalization of Au NPs. In this study, a home-made Neisseria meningitidis recombinant antibody (scFv-Fc) was developed by connecting the fragment crystallizable (Fc) region of a human antibody with a mouse recombinant antibody (single-chain variable fragment antibody (scFv)) and characterized using the SOEing PCR technique. Then, an optimized gold coating agent for the scFv-Fc/Au NP conjugation (i.e., the citrate agent) was found among three common agents (citrate, allylamine hydrochloride, and polyvinyl alcohol) with...
Numerical Study of Geotextile Application in Downstream Filter Zone of an Embankment Dam with Clay Core
, M.Sc. Thesis Sharif University of Technology ; Shamsaie, Abolfazl (Supervisor)
Abstract
Nowadays, applications of the synthetic materials are developing in civil engineering projects and widely used in these projects. Therefore, during previous years; use of the Geotextiles as one of the Geosynthetic materials in order to filtration, drainage, separation, soil protection, etc have developed ever-increasing. The goal of this research is modeling and studies of the Geotextiles application in the downstream filter zone of embankment dams in combination with granular materials using FLAC2D software. Gordeh Bin embankment dam situated in West Azerbaijan province has been chosen as case study. In this matter, different models have been made with changes in thickness of the inclined...
groundwater level fluctuations forecasting using conjunction models of Wavelet - Neural-Fuzzy Network (WNF) and Wavelet-Neural Network (WNN) and linear model of ARIMA (case study: Qom plain
,
M.Sc. Thesis
Sharif University of Technology
;
Shamsaei, Abolfazl
(Supervisor)
Abstract
Prediction of groundwater level fluctuations is absolutely necessary for the proper manag ement of these precious resources. There are different methods to predict hydrological time series such as groundwater level. Linear models inefficiency in predicting nonlinear and n on-stationary time series cause researchers widely use artificial intelligence techniques such as Artificial Neural Networks (ANN), Fuzzy Inference System (FIS), Genetic Algorithm (GA) and their hybrid models such as Artificial Neural – Fuzzy Inference System (ANFIS). These smart models are capable to simulate nonlinear and non-stationary time series in suitable accu-racy using by a few time and data. By emersion of Wavelet...
, M.Sc. Thesis Sharif University of Technology ; Shamsaei, Abolfazl (Supervisor)
Abstract
Entrance of air to close water conduits occurs in many ways. This phenomenon makes displeasing effects on water transport structures. Two-phase flows in closed conduits are studied experimentally, numerically and theoretically. Even after decades, due to the complexity of the subject, these studies still require development and reformation. Numerical and theoretical two-phase models are often limited to a special regime of flow."Volume Of Fluid"(VOF) is a model for non-mixing two-phase flows. "Fluent" software uses this model in this field of flows. Volume of fluid is used successfully in some problems like dam break or rising bubbles. Main disadvantage of this model is distribution of the...
Assessment of waterlogging and provide risk maps by using RS, GIS and field data (case study: Qazvin plain)
,
M.Sc. Thesis
Sharif University of Technology
;
Shamsaei, Abolfazl
(Supervisor)
Abstract
Groundwater quality protection has a significant importance due to abundant applications of these resources in various fields such as agriculture, industry and drinking water. Removal of groundwater pollution is a time and money consuming process and often pollution is detected when improving the quality of groundwater is nearly impossible. For this vulnerability assessment there are three methods: Processing, Overlap-Index and Statistical Methods. Overlap-Index is composed of variety of maps such as Geology, Soil, Groundwater Depth and etc which uses in determining of vulnerability Index. In the present study for underground pollution potential determining, four indexes such as AVI، GOD،...
Efficient Management of River Water Quality Based on Pollution Trading Approach
, Ph.D. Dissertation Sharif University of Technology ; Shamsai, Abolfazl (Supervisor)
Abstract
“Sustainable development” is a frequently used phrase, but the idiom has been experienced little since it was coined by the Brundtland, due to its intrinsic complications. The issue is going to compromise two key components; economy and ecology. One of the solutions based on concept of sustainable development that has been proposed for maintaining water quality at acceptable levels is to cap pollutant emissions at a sustainable level, then establish an economic market in which the right to discharge pollutants is traded according to market supply and demand mechanisms. Water quality trading or pollution trading is one such kind of market-based program that has also been described using names...
Semi-supervised Breast Cancer Subtype Clustering Using Microarray Datasets
, M.Sc. Thesis Sharif University of Technology ; Motahhari, Abolfazl (Supervisor)
Abstract
Gene expression microarrays can be used for precision medicine and targeted therapies. The data generated by microarrays are high-dimensional causing statistical inference of any parameter a daunting task. In this thesis, it is shown that regardless of high-dimensional datasets produced by microarrays, the inference can be robust in the sense that random selection of features results in the same conclusion as far as the number of selected features are chosen appropriately. Stratifying patients with breast cancer based on their gene expression levels shows that patient subtypes are almost independent of the feature selection strategy. Moreover, using less noisy datasets coming from RNAseq...
A Simulation for Better Understanding of Integrin Clustering and Activation
, M.Sc. Thesis Sharif University of Technology ; Motahhari, Abolfazl (Supervisor)
Abstract
Today, computer simulations are employed prevalently by researchers to understand biological processes. The tendency to use computational methods has been increased recently due to the high costs and errors of experimental methods. Integrins are membrane proteins that mechanically attach cells to the extra cellular matrix (ECM) and derive some behaviors such as cell migration. Moreover, integrins have biochemical functions. They transduce environment signals and trigger chemical pathways. As a result, integrins regulate cell shape, motility, etc. The investigation of integrin behavior in a real environment is very difficult due to the presence of many other proteins that interfere with the...
Hydro-economical Method for the Optimal Capacity Design of Small Hydropower Plant (Case Study: Kohneh Lahijan Hydropower Plant)
, M.Sc. Thesis Sharif University of Technology ; Shamsai, Abolfazl (Supervisor)
Abstract
In this thesis, we determine the optimal capacity of the power plants considering site specifications and Flow Duration Curve and evaluating economic parameters. Finally a design with more sufficient economical and hydrualical performance would be selected. The optimization algorithm used in this thesis is called "Charged System search" that is one of the newest meta-heuristic algorithms. This algorithm is inspired by the coulomb and gauss's laws of electrostatics in physics and utilizes a number of charged particles which influence each other based on their fitness values and their separation distances considering the governing law of coulomb.The proposed method in this thesis can be...
GIS Based Procedure to Determine Location of Cascade Small Hydropower Plants Case Study, Nokhan Area
, M.Sc. Thesis Sharif University of Technology ; Shamsai, Abolfazl (Supervisor)
Abstract
Coinciding with the worldwide environmental issues and increasing demand for clean energy sources, hydropower plants have highly attracted decision- makers attention. Low manufacturing costs and pollutions which are made by these plants in comparison with another types of powerhouses, could be reason of that. And so on, hydropower locating and evaluating studies have been highly increased recently, specifically in developing countries. From the point of operation procedure, hydropower plants are generally divided in two types, run-of-he-river and storage projects. This study has concentrated on run-of-he-river projects and due to spotting plant location, Sefidbarg river basin...
Investigation of bed Stability in Downstream for the Diversion dam under Scour (Mill & Moghan case study)
, M.Sc. Thesis Sharif University of Technology ; Shamsai, Abolfazl (Supervisor)
Abstract
Numerical simulations and large eddy simulations (LES) of turbulent flow downstream of diversion dam , pool-riffle bedform in different geometrical ratios (different lengths of riffle and pool) with flow Reynolds number of 3.0 E+04 to 3.3E+04, downstream of special case study "Mill and Moghan diversion dam" with Froude number of 0.5 are presented The calculations are performed using a computational fluid dynamics model, FLOW-3D, which solves the Navier-Stokes equations in three dimensions with finite volume method. Numerical simulations are validated by comparing the numerical results of time-averaged flow patterns downstream of pool-riffle sequence with that of the experimental...
Assessment of Optimum Environmental Flows Using Economic Evaluation Methods
, M.Sc. Thesis Sharif University of Technology ; Shamsai, Abolfazl (Supervisor)
Abstract
One of the main challenges of Water Resources Planning and Management (WRPM) is to balance water allocation between different uses. Usually, due to political and economic power of other uses, ecosystem receives less attention. Environmental flow is the allocated flow to ecosystem. Ecosystem provides a wide range of services to humanity. Therefore, environmental flow is not exclusively a matter of sustaining ecosystem but also a matter of providing humans with better life. Several methods have been developed to determine the environmental flow but only a few consider its socio-economic aspects. Consideration of these aspects could assist decision-makers with determining the optimum flow and...
Application of Gis & Fuzzy Technique for Order-Preference by Similarity to Ideal Solution (Topsis) in Siting Water Reservoires
, M.Sc. Thesis Sharif University of Technology ; Shamsai, Abolfazl (Supervisor)
Abstract
Sustainable agricultural development in the country without regard to water supply problems in terms of time and place is not possible. Construction of water storage tanks filled with water and seasonal use in dry seasons in the effective action in the optimal use of water in the climate of (low and irregular rainfall) is. The most important step in the construction of water storage tanks to choose the best point for the construction of the reservoir basin in order to reduce costs and increase efficiency. Chndmyarh different methods to decide the best option for finding a few options from there. Among these methods can be Tapsys two methods (TOPSIS) and hierarchical analysis (AHP) pointed...
Analysis of Genes Regulating Beta Cells Cell Cycle
, M.Sc. Thesis Sharif University of Technology ; Motahari, Abolfazl (Supervisor)
Abstract
Diabetes mellitus is a group of disorders where the level of blood sugar remains high for a long period of time. This increase may be due to either reduced insulin secretion from the pancreatic gland, or insulin resistance, or both. Another key reason is the destruction of beta cells due to functional defect in the body’s immune system. Current treatments include controlling diet, insulin injection and pancreatic transplantation, all of which are temporary. For this reason, finding genetic factors participating in the progression of the disease and adapting treatments to these factors are under intensive studies.In this thesis, available information resources including genomic, biological...
Presentation and Modeling of a New Nanocomposite Shield Against Gamma Radiation Based on Simulation and Computational Tools
, M.Sc. Thesis Sharif University of Technology ; Hosseini, Abolfazl (Supervisor)
Abstract
In this study, using the MCNPX computer code based on the Monte Carlo method, the properties of protection against gamma-rays of the glass system with the combination of (55-x)Bi2O3-15Pb3O4-20Al2O3-10ZnO-xTiO2 with certain concentrations (x= 0, 5, 10, 15, 20, 25, 30 and 35 mol percent) and in nano and micro dimensions by calculating several parameters related to photon attenuation such as half value layer (HVL), Tenth value layer (TVL), mean free range (MFP), mass attenuation coefficient (m), linear attenuation coefficient (l), effective atomic number (Zeff) and buildup factor (BF) for We investigated different energy levels in the range of 1500-100 keV. To verify the simulation results,...
Investigating the Use of Gold Nanoparticle in Increasing Dose of Tumor and Reducing the Dose of Normal Tissue in Brachytherapy
, M.Sc. Thesis Sharif University of Technology ; Hosseini, Abolfazl (Supervisor)
Abstract
Over the past few decades, brachytherapy has been used as one of the leading methods in the treatment of a wide range of cancers, including breast cancer. Due to the high dose gradient of brachytherapy radiation sources, this method is used to treat such tumors that are grown at the vicinity of sensitive points or tissues of the body. Therefore, as irradiation get started by implanting radiation sources in the desired position, at the same time healthy tissue are also receiving the same dose as tumor tissues do Reducing healthy tissue dose along with increasing the dose of tumor tissue is one of the challenging topics that researchers are always looking for a solution. In the left breast...
Simulation and Optimization of Dual-Layer Detector Computed Tomography (DLCT) based on the Monte Carlo Method in Order to Reduce the Dose
, M.Sc. Thesis Sharif University of Technology ; Hosseini, Abolfazl (Supervisor)
Abstract
The increasing advancement of computed tomography (CT) systems has led to the recognition of this type of imaging as an accurate and reliable method in diagnosing and assessing damage to humans and materials. Adding dual energy imaging to these systems can increase the material's ability to differentiate in this system and provide higher contrast than usual. Recently, a medical imaging technique has been introduced that uses an X-ray tube and two detector layers on top of each other, each layer absorbing a different energy spectrum.dual layer computed tomography system has been introduced today as a suitable tool for evaluating and diagnosing many diseases, due to the reliability and...