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    Site-specific protein conjugation onto fluorescent single-walled carbon nanotubes

    , Article Chemistry of Materials ; Volume 32, Issue 20 , 2020 , Pages 8798-8807 Zubkovs, V ; Wu, S. J ; Rahnamaee, S. Y ; Schuergers, N ; Boghossian, A. A ; Sharif University of Technology
    American Chemical Society  2020
    Abstract
    Semiconducting single-walled carbon nanotubes (SWCNTs) are among the few photostable optical emitters that are ideal for sensing, imaging, drug delivery, and monitoring of protein activity. These applications often require strategies for immobilizing proteins onto the nanotube while preserving the optical properties of the SWCNTs. Site-specific and oriented immobilization strategies, in particular, offer advantages for improving sensor and optical signaling responses. In this study, we demonstrate site-specific protein immobilization of a model of enhanced yellow fluorescent protein with a single engineered cysteine residue, using either single-stranded DNA or a pyrene-containing linker to... 

    NIR emitting platinum pincer complexes based on the N^N^C ligand containing {benz[4,5]imidazo[1,2-a]pyrazin} aromatic system; synthesis, characterization and photophysical study

    , Article Inorganica Chimica Acta ; Volume 511 , 2020 Shakirova, J. R ; Hendi, Z ; Zhukovsky, D. D ; Sokolov, V. V ; Jamali, S ; Pavlovskiy, V. V ; Porsev, V. V ; Evarestov, R. A ; Tunik, S. P ; Sharif University of Technology
    Elsevier S.A  2020
    Abstract
    In the present work we obtained a series of NIR luminescent platinum(II) complexes with a pincer N^N^C ligand based on the conjugated {benzoimidazo[1,2-a]pyrazine} system with the [Pt(N^N^C)L]n+ structural motif (L = phosphine, alkynyl or pyridine-type ligands). We have also synthesized two complexes with bidentate phosphines that demonstrate different types of coordination: 1) as chelating ligand (in case of 1,2-bis(diphenylphosphino)benzene), that led to de-coordination of pyridine ring of N^N^C ligand and formation of a [Pt(N^C)dppb]+ complex; 2) as a bridging ligand (in case of bis(diphenylphosphino)methane) between two {Pt(N^N^C)} fragments in a dimeric complex of type... 

    Targeted synthesis of NIR luminescent rhenium diimine cis,trans-[Re(NN)(CO)2(L)2]n+ complexes containing N-Donor axial ligands: photophysical, electrochemical, and theoretical studies

    , Article ChemPlusChem ; Volume 85, Issue 11 , 2020 , Pages 2518-2527 Shakirova, J. R ; Nayeri, S ; Jamali, S ; Porsev, V. V ; Gurzhiy, V. V ; Levin, O. V ; Koshevoy, I. O ; Tunik, S. P ; Sharif University of Technology
    Wiley-VCH Verlag  2020
    Abstract
    The combined action of ultraviolet irradiation and microwave heating onto acetonitrile solution of [Re((Formula presented.))(CO)3(NCMe)]OTf ((Formula presented.) =phenantroline and neocuproine) afforded cis,trans-Re((Formula presented.))(CO)2(NCMe)2]+ acetonitrile derivatives. Substitution of relatively labile NCMe with a series of aromatic N-donor ligands (pyridine, pyrazine, 4,4’-bipyridine, N-methyl-4,4’-bipyridine) gave a novel family of the diimine cis,trans-[Re((Formula presented.))(CO)2(L)2]+ complexes. Photophysical studies of the obtained compounds in solution revealed unusually high absorption across the visible region and NIR phosphorescence with emission band maxima ranging from... 

    Spectra of Deza graphs

    , Article Linear and Multilinear Algebra ; 2020 Akbari, S ; Ghodrati, A. H ; Hosseinzadeh, M. A ; Kabanov, V. V ; Konstantinova, E. V ; Shalaginov, L. V ; Sharif University of Technology
    Taylor and Francis Ltd  2020
    Abstract
    A Deza graph with parameters (n, k, b, a) is a k-regular graph with n vertices such that any two of its vertices have b or a common neighbours, where b ≥ a. In this paper we investigate spectra of Deza graphs. In particular, using the eigenvalues of a Deza graph we determine the eigenvalues of its children. Divisible design graphs are significant cases of Deza graphs. Sufficient conditions for Deza graphs to be divisible design graphs are given, a few families of divisible design graphs are presented and their properties are studied. Our special attention goes to the invertibility of the adjacency matrices of Deza graphs. © 2020, © 2020 Informa UK Limited, trading as Taylor & Francis Group  

    Spectra of deza graphs

    , Article Linear and Multilinear Algebra ; Volume 70, Issue 2 , 2022 , Pages 310-321 ; 03081087 (ISSN) Akbari, S ; Ghodrati, A. H ; Hosseinzadeh, M. A ; Kabanov, V. V ; Konstantinova, E. V ; Shalaginov, L. V ; Sharif University of Technology
    Taylor and Francis Ltd  2022
    Abstract
    A Deza graph with parameters (Formula presented.) is a k-regular graph with n vertices such that any two of its vertices have b or a common neighbours, where (Formula presented.). In this paper we investigate spectra of Deza graphs. In particular, using the eigenvalues of a Deza graph we determine the eigenvalues of its children. Divisible design graphs are significant cases of Deza graphs. Sufficient conditions for Deza graphs to be divisible design graphs are given, a few families of divisible design graphs are presented and their properties are studied. Our special attention goes to the invertibility of the adjacency matrices of Deza graphs. © 2020 Informa UK Limited, trading as Taylor &... 

    Adsorption of proteins at the solution/air interface influenced by added nonionic surfactants at very low concentrations for both components. 3. dilational surface rheology

    , Article Journal of Physical Chemistry B ; Volume 119, Issue 9 , January , 2015 , Pages 3768-3775 ; 15206106 (ISSN) Fainerman, V. B ; Aksenenko, E. V ; Lylyk, S. V ; Lotfi, M ; Miller, R ; Sharif University of Technology
    2015
    Abstract
    The influence of the addition of the nonionic surfactants C12DMPO, C14DMPO, C10OH, and C10EO5 at concentrations between 10-5 and 10-1 mmol/L to solutions of β-casein (BCS) and β-lactoglobulin (BLG) at a fixed concentration of 10-5 mmol/L on the dilational surface rheology is studied. A maximum in the viscoelasticity modulus |E| occurs at very low surfactant concentrations (10-4 to 10-3 mmol/L) for mixtures of BCS with C12DMPO and C14DMPO and for mixtures of BLG with C10EO5, while for mixture of BCS with C10EO5 the value of |E| only slightly increased. The |E| values... 

    Treatment of beet sugar wastewater by UAFB bioprocess

    , Article Bioresource Technology ; Volume 98, Issue 16 , 2007 , Pages 3080-3083 ; 09608524 (ISSN) Farhadian, M ; Borghei, M ; Umrania, V. V ; Sharif University of Technology
    2007
    Abstract
    The aim of this work was to study the treatment of strong beet sugar wastewater by an upflow anaerobic fixed bed (UAFB) at pilot plant scale. Three fixed bed bioreactors (each 60 L) were filled with standard industrial packing, inoculated with anaerobic culture (chicken manure, cow manure, anaerobic sludge digested from domestic wastewater) and operated at 32-34 °C with 20 h hydraulic retention time (HRT) and influent COD ranging between 2000-8000 mg/L. Under these conditions the maximum efficiency of organic content reduction in the reactor ranged from 75% to 93%. The reactor filled with standard pall rings made of polypropylene with an effective surface area of 206 m2/m3 performed best in... 

    GHZ states as near-optimal states for reference frame alignment

    , Article Quantum Information Processing ; Volume 20, Issue 10 , 2021 ; 15700755 (ISSN) Koochakie, M. M. R ; Jannesary, V ; Karimipour, V ; Sharif University of Technology
    Springer  2021
    Abstract
    Let two coordinate systems, in possession of Alice and Bob, be related to each other by an unknown rotation R∈ SO (3). Alice is to send identical states | ψ⟩ to Bob who will make measurements on the received state and will determine the rotation R. The task of Bob is to estimate these parameters of the rotation R by the best possible measurements. Based on the quantum Fisher information, we show that Greenberger–Horne–Zeilinger (GHZ) states are near optimal states for this task. We show concrete measurements which will allow Bob to determine the rotation R. This shows that GHZ states, as superposition of macroscopically distinct states, are useful in yet another context in quantum... 

    Spectra of strongly Deza graphs

    , Article Discrete Mathematics ; Volume 344, Issue 12 , 2021 ; 0012365X (ISSN) Akbari, S ; Haemers, W. H ; Hosseinzadeh, M. A ; Kabanov, V. V ; Konstantinova, E. V ; Shalaginov, L ; Sharif University of Technology
    Elsevier B.V  2021
    Abstract
    A Deza graph G with parameters (n,k,b,a) is a k-regular graph with n vertices such that any two distinct vertices have b or a common neighbours. The children GA and GB of a Deza graph G are defined on the vertex set of G such that every two distinct vertices are adjacent in GA or GB if and only if they have a or b common neighbours, respectively. A strongly Deza graph is a Deza graph with strongly regular children. In this paper we give a spectral characterisation of strongly Deza graphs, show relationships between eigenvalues, and study strongly Deza graphs which are distance-regular. © 2021 Elsevier B.V  

    Spectra of strongly Deza graphs

    , Article Discrete Mathematics ; Volume 344, Issue 12 , 2021 ; 0012365X (ISSN) Akbari, S ; Haemers, W. H ; Hosseinzadeh, M. A ; Kabanov, V. V ; Konstantinova, E. V ; Shalaginov, L ; Sharif University of Technology
    Elsevier B.V  2021
    Abstract
    A Deza graph G with parameters (n,k,b,a) is a k-regular graph with n vertices such that any two distinct vertices have b or a common neighbours. The children GA and GB of a Deza graph G are defined on the vertex set of G such that every two distinct vertices are adjacent in GA or GB if and only if they have a or b common neighbours, respectively. A strongly Deza graph is a Deza graph with strongly regular children. In this paper we give a spectral characterisation of strongly Deza graphs, show relationships between eigenvalues, and study strongly Deza graphs which are distance-regular. © 2021 Elsevier B.V  

    Pyridinium salts - Versatile reagents for the regioselective synthesis of functionalized thiazocino[2,3-b]indoles by tandem dinucleophilic reactions of thiooxindoles

    , Article Tetrahedron ; Volume 68, Issue 47 , 2012 , Pages 9685-9693 ; 00404020 (ISSN) Kiamehr, M ; Moghaddam, F. M ; Gormay, P. V ; Semeniuchenko, V ; Villinger, A ; Langer, P ; Iaroshenko, V. O ; Sharif University of Technology
    2012
    Abstract
    The reaction of thiooxindoles with various 2- and 3-substituted pyridinium salts afforded a variety of functionalized thiazocinoindoles. The products have been prepared in good to excellent yields by regioselective dinucleophilic C/S-cyclocondensation of thiooxindoles with pyridinium salts  

    A rare type of Rhenium(I) diimine complexes with unsupported coordinated phosphine oxide ligands: Synthesis, Structural Characterization, Photophysical and theoretical study

    , Article European Journal of Inorganic Chemistry ; Volume 2019, Issue 39-40 , 2019 , Pages 4350-4357 ; 14341948 (ISSN) Nayeri, S ; Jamali, S ; Pavlovskiy, V. V ; Porsev, V. V ; Evarestov, R. A ; Kisel, K. S ; Koshevoy, I. O ; Shakirova, J. R ; Tunik, S. P ; Sharif University of Technology
    Wiley-VCH Verlag  2019
    Abstract
    This paper presents synthesis and photophysical investigation of a very rare type of the ReI diimine complexes, [Re(diimine)(CO)3(OPR3)]+, R = Ph, Cy; diimine – phenanthroline and neocuproine, containing monodentate (unsupported) phosphine oxide ligands. The obtained compounds have been structurally characterized in solid phase by using XRD crystallography, which revealed unusual distortions in the pseudo octahedral rhenium environment, which may be ascribed to intramolecular interligand (phosphine oxide – diimine) interaction rather than to crystal packing effect. Optimization of the ground state structure of these molecules with the DFT method also confirmed intramolecular origin of the... 

    Soluble tetratriphenylamine zn phthalocyanine as hole transporting material for perovskite solar cells

    , Article Electrochimica Acta ; Volume 222 , 2016 , Pages 875-880 ; 00134686 (ISSN) Nouri, E ; Krishna, J. V. S ; Kumar, C. V ; Dracopoulos, V ; Giribabu, L ; Mohammadi, M. R ; Lianos, P ; Sharif University of Technology
    Elsevier Ltd  2016
    Abstract
    Perovskite solar cells have been constructed under the standard procedure by employing soluble tetratriphenylamine-substituted Zn phthalocyanine as hole transporting material. Solution processed device construction was carried out under ambient conditions of 50–60% ambient humidity. Triphenylamine substitution played the double role of imparting solubility to the core metal phthalocyanine as well as to introduce electron-rich ligands, which could enhance the role of Zn phthalocyanine as hole transporter. Indeed, the obtained material was functional. The present data highlight tetratriphenylamine-substituted Zn phthalocyanine as hole transporting material but also highlight the importance of... 

    Finite element analysis of a CFRP reinforced retaining wall

    , Article Geomechanics and Engineering ; Volume 10, Issue 6 , 2016 , Pages 757-774 ; 2005307X (ISSN) Ouria, A ; Toufigh, V ; Desai, C ; Toufigh, V ; Saadatmanesh, H ; Sharif University of Technology
    Techno Press  2016
    Abstract
    Soils are usually weak in tension therefore different materials such as geosynthetics are used to address this inadequacy. Worldwide annual consumption of geosynthetics is close to 1000 million m2, and the value of these materials is probably close to US$1500 million. Since the total cost of the construction is at least four or five times the cost of the geosynthetic itself, the impact of these materials on civil engineering construction is very large indeed. Nevertheless, there are several significant problems associated with geosynthetics, such as creep, low modulus of elasticity, and susceptibility to aggressive environment. Carbon fiber reinforced polymer (CFRP) was introduced over two... 

    Universal superposition of orthogonal states

    , Article Physical Review A ; Volume 96, Issue 5 , 2017 ; 24699926 (ISSN) Doosti, M ; Kianvash, F ; Karimipour, V
    2017
    Abstract
    It is known that no quantum process can produce a predetermined superposition of unknown arbitrary states. It has already been shown that with some partial information about the states, one can produce with some probability such superpositions. In general the success probability of these machines, even for orthogonal states, are less than unity. Here we show that there are specific machines that can produce superpositions of orthogonal qubit states with unit probability. © 2017 American Physical Society  

    Studies of the rate of water evaporation through adsorption layers using drop shape analysis tensiometry

    , Article Journal of Colloid and Interface Science ; Volume 308, Issue 1 , 2007 , Pages 249-253 ; 00219797 (ISSN) Fainerman, V. B ; Makievski, A. V ; Krägel, J ; Javadi, A ; Miller, R ; Sharif University of Technology
    2007
    Abstract
    With modified measuring procedure and measuring cell design in the drop profile tensiometer PAT, it became possible to study the rate of water evaporation through adsorbed or spread surface layers. This method was employed to measure the rate of water evaporation from drops covered by adsorbed layers of some proteins and surfactants, in particular n-dodecanol. It was shown that the formation of dense (double or condensed) adsorbed layers of protein and the formation of 2D-condensed n-dodecanol layer decrease the water evaporation rate by 20-25% as compared with pure water. At the same time, the adsorbed layers of ordinary surfactants (sodium dodecyl sulfate and nonionic ethoxylated... 

    Experimental study and modeling of gravity drainage during WAG process in fractured carbonate rocks

    , Article Iranian Journal of Chemistry and Chemical Engineering ; Volume 27, Issue 3 , October , 2008 , Pages 103-113 ; 10219986 (ISSN) Jafari, M ; Badakhshan, A ; Taghikhani, V ; Rashtchian, D ; Gotbi, C ; Sajadian, V. A ; Sharif University of Technology
    2008
    Abstract
    The experimental study and modeling of gravity drainage during Water Alternative Gas Injection, WAG process, in carbonate rock for one of the Iranian off-shore reservoir at lab-scale were carried out. The mechanism of gravity drainage during the WAG process, and its contribution to the oil recovery in the fractured carbonate reservoirs were also studied. In the WAG process alternatively gas is injected during the process and gravity drainage could be happened. Changes in the block dimensions, rock properties, oil properties, gas properties, and fractures properties and their effect on the amount of oil recovered during the gravity drainage mechanism were studied. It would be worth mentioning... 

    Facile synthesis of thiochromeno[2,3-b]indol-11(6H)-ones and pyrido[3′,2′:5,6]thiopyrano[2,3-b]indol-5(10H)-ones

    , Article Tetrahedron Letters ; Volume 54, Issue 37 , 2013 , Pages 5018-5021 ; 00404039 (ISSN) Kiamehr, M ; Moghaddam, F. M ; Semeniuchenko, V ; Villinger, A ; Langer, P ; Iaroshenko, V. O ; Sharif University of Technology
    2013
    Abstract
    Indole-2(3H)thiones were cyclized under the action of 2-fluorobenzoyl chlorides to give thiochromeno[2,3-b]indol-11(6H)-ones or under the action of 2-chloronicotinoyl chlorides to give pyrido[3′,2′:5,6]thiopyrano[2, 3-b]indol-5(10H)-ones. The reaction of cyclization proceeds regioselectively in DMF and does not require transition metals for completion. Obtained heterocycles are isosteric analogues of various tetracyclic indole derived alkaloids  

    Alterations of the electroencephalogram sub-bands amplitude during focal seizures in the pilocarpine model of epilepsy

    , Article Physiology and Pharmacology ; Volume 16, Issue 1 , 2012 , Pages 11-20 ; 17350581 (ISSN) Motaghi, S ; Niknazar, M ; Sayyah, M ; babapour, V ; Vahdat, B. V ; Shamsollahi, M. B ; Sharif University of Technology
    2012
    Abstract
    Introduction: Temporal lobe epilepsy (TLE) is the most common and drug resistant epilepsy in adults. Due to behavioral, morphologic and electrographic similarities, pilocarpine model of epilepsy best resembles TLE. This study was aimed at determination of the changes in electroencephalogram (EEG) sub-bands amplitude during focal seizures in the pilocarpine model of epilepsy. Analysis of these changes might help detection of a pre-seizure state before an oncoming seizure. Methods: Rats were treated by scopolamine (1mg/kg, s.c) to prevent cholinergic effects. After 30 min, pilocarpine (380 mg/kg, i.p) was administered to induce status epilepticus (SE) and 2 hours after SE, diazepam (20 mg/kg,... 

    Adsorption of proteins at the solution/air interface influenced by added non-ionic surfactants at very low concentrations for both components. 1. Dodecyl dimethyl phospine oxide

    , Article Colloids and Surfaces A: Physicochemical and Engineering Aspects ; Volume 475, Issue 1 , June , 2015 , Pages 62-68 ; 09277757 (ISSN) Lotfi, M ; Javadi, A ; Lylyk, S. V ; Bastani, D ; Fainerman, V. B ; Miller, R ; Sharif University of Technology
    2015
    Abstract
    The adsorption of proteins at liquid interfaces happens at rather low bulk concentrations due to their rather high surface activity. In contrast typical surfactants start to decrease the surface tension at bulk concentration in the range of mmol/l and reach a minimum value at about two or three orders of magnitude higher concentration. The two proteins studied here, β-lactoglobulin and β-casein, adsorb already remarkably at much lower concentrations, i.e. less than 1. μmol/l. When smallest amounts of a non-ionic surfactant are added to low concentrated protein solutions, changes in the surface tension are observed which cannot be explained by the existing theoretical models. An agreement...