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    Haploblock Detection Based on Reads and Population Structure

    , M.Sc. Thesis Sharif University of Technology Akbari, Elahe (Author) ; Motahari, Abolfazl (Supervisor)
    Abstract
    Human is diploid specie that inherits a set of chromosomes from their mother and a set from their father. The process of separating the nucleotide content of a set of extracted maternal and paternal chromosomes for an individual or a population is called phasing the genome of the individual or the population. The placement of any two variants relative to each other in diploid species is possible in two forms: cis (placement of both variants on one chromosome), and trans (placement of variants on different chromosomes). Each of these conditions leads to different phenotypes. Thus, understanding how variants are placed relative to each other is a crucial problem in human biology which is...