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    Chemical Reaction Systems with Toric Steady States

    , M.Sc. Thesis Sharif University of Technology Grami Moghaddam, Morteza (Author) ; Pournaki, Mohammad Reza (Supervisor)
    Abstract
    Mass-action chemical reaction systems are frequently used in computational biology. The corresponding polynomial dynamical systems are often large (consisting of tens or even hundreds of ordinary differential equations) and poorly parameterized (due to noisy measurement data and a small number of data points and repetitions). Therefore, it is often difficult to establish the existence of (positive) steady states or to determine whether more complicated phenomena such as multi-stationarity exist. If, however, the steady state ideal of the system is a binomial ideal, then we show that these questions can be answered easily. The focus of this work is on systems with this property, and we say...