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    Multi- and Single-cellular Encapsulation within Microchannels for Effective Cell Lysis and DNA Extraction and Purification

    , M.Sc. Thesis Sharif University of Technology Hassani Gangaraj, Mojtaba (Author) ; Shamloo, Amir (Supervisor)
    Abstract
    In this study a droplet-based microfluidic system is desighned and fabricated to effectiverly lyse MCF7 cells and extract and purify their DNAs. The main purpose of this study is to transfer all the steps from macro scale to a microfluidic system containing a fluidic chip. This system is a semi automatic system and every part of the lysis and purification process is performed in one step. The first step is to encapsulate single cells and multi cells inside the droplets. By controlling the concentration of the cell solution, the number of encapsulated cells inside the droplet is efficiently and easily controlled and the cells were encapsulated as single cells and as multi cells inside the... 

    Cloning and Production of the Flavin Reductase Enzyme in Order to Perform Organic Reaction and Synthesis of Cation Exchange Column for Protein Purification

    , M.Sc. Thesis Sharif University of Technology Hayati, Fatemeh (Author) ; Kalhor, Hamid Reza (Supervisor)
    Abstract
    The reductase enzymes perform an important function in the cell. These enzymes are usually coupled with other enzymes and participate in reactions such as halogenation, reduction of alkene, and carboxylic acids. These reactions are carried out by reproducing cofactors such as FADH2 and NAD+; however, there is no evidence that this enzyme alone can perform an organic reaction. In this work, we aim to examine whether recombinant flavin reductase can carry out organic reactions. In order to amplify the flavin reductase enzyme gene from the E. coli genome by PCR (Polymerase Chain Reaction) method, two synthetic primers were designed; The forward primer of the gene contained a cleavage site for... 

    Development of Simulation Model and Optimal Design of Water and Energy Recirculation System in Residential Towers

    , M.Sc. Thesis Sharif University of Technology Javadinia, Maryam (Author) ; Saboohi, Yadollah (Supervisor) ; Fathi, Amir Hossein (Supervisor)
    Abstract
    nowadays, due to population growth, unconventional use of water resources and on the other hand, climate change, limited renewable water resources, reduction of groundwater cavities, the need for water for agricultural use and energy production are increasing. Due to the fact that each cubic meter of dirty water pollutes 40 to 60 cubic meters of clean water and the entry of polluted effluent into the receiving sources of environmental degradation leads to a lot of wastewater treatment, water consumption management and The development of wastewater treatment processes is also becoming increasingly important. At present, wastewater treatment plants face the challenges of high energy... 

    Building Capillar Microseparators to Separate the Organic and Aqeuous Phase

    , M.Sc. Thesis Sharif University of Technology Karimi Dareeshghi, Nima (Author) ; Mohammadi, Ali Asghar (Supervisor)
    Abstract
    During the past years, microtechnologies have been extensively used in Chemical reactions. In these systems, using an optimal system for separation, and purification of Chemical Products is of great importance. In this study, we have focused on the separation of organic-phase and aqueous-phase Products in 26 fabricated microsystems. The fabrication method of the glass microseparators consists of Lithography, Acidization, and Glass-to-Glass Thermal Connection. We have also studied key parameters of organic and aqueous phase separation in continuous capillary microseparators like the width of the capillary channel, length of the capillary channel, number of the capillary channels, and flow of... 

    Design and Fabrication of Microfluidic System for Cell Lysis and DNA Purification

    , M.Sc. Thesis Sharif University of Technology Jalilvand, Elahe (Author) ; Shamloo, Amir (Supervisor) ; Hosseini, Vahid (Supervisor)
    Abstract
    Nowadays, intracellular studies have been widely developed in biological applications. Intracellular analysis requires direct experiments on cells such as cell separation, purification, lysis and DNA extraction. The process of cell lysis and the resulting DNA purification is a crucial step in diagnostic processes. Since, the basis of many genetic studies is the information existed in double-stranded DNA structures.In this project, a microfluidic system is presented which performs integrated chemical cell lysis and DNA extraction. The cell used in this study is L-929. In order to increase cell lysis, the serpentine micromixer in combination with internal and external barriers at the beginning... 

    Treatment of Triclosan Through Enhanced Microbial Biodegradation

    , M.Sc. Thesis Sharif University of Technology Ghafouri, Mahsa (Author) ; Yaghmaei, Soheila (Supervisor) ; Ghobadi Nejad, Zahra (Supervisor)
    Abstract
    Triclosan is widely used as an antibacterial agent in personal health care products, especially in recent years with the spread of the Coronavirus. This substance is one of the emerging contaminants, and due to its stable and toxic nature, this material cannot be destroyed in the process of biological wastewater treatment. In this research, a new bacterial strain was isolated and purified from industrial wastewater for the biological removal of triclosan. Based on 16S rRNA sequencing, it was found that the isolated strain belongs to the Enterobacter cloacae family and can grow in high concentrations of triclosan. It was observed that naphthalene dioxygenase and laccase enzymes are active... 

    Studying the Effective Factors and Optimizing Enzyme (α-amylase) Separation in Multi-Enzyme Systems by Agarose Column Chromatography

    , Ph.D. Dissertation Sharif University of Technology Ataallahi, Elahe (Author) ; Roosta Azad, Reza (Supervisor) ; Soheila Yaghmaee (Supervisor) ; Yeganeh Sarkandi, Shahin (Co-Supervisor)
    Abstract
    In all types of chromatography for the extraction and purification of proteins, a fixed substrate is needed with which the mobile phase containing the proteins interact with them. This fixed bed should contain grains that have characteristics such as sphericity, high surface area, hydrophilicity, binding power to functional groups, chemical stability, low specific absorption, reusability and low cost. Commercially, the most commonly substrates in the ranges of the molecular weight of proteins are agarose and dextran. Agar was extracted from Gracilaria salicornia seaweed and removal of ionic groups was investigated by three methods. In washing with isopropanol, the ionic groups were reduced... 

    Production of Gold with High Purity by Electrorefining Process

    , M.Sc. Thesis Sharif University of Technology Palangi, Zakaria (Author) ; Yoozbashizadeh, Hossein (Supervisor)
    Abstract
    Gold is a noble and precious metal used in various industries, including jewelry, electrical and electronic, catalyst, and medical industries. Multiple processes are used to extract and refine gold; each one has its advantages and disadvantages. In this research Work, comprehensive information on the electrochemical purification process of gold from anode electrode with 75% crude gold and titanium cathode electrode in the chloride electrolyte solution is presented. To perform the purification process, first using the parameters and their levels, including temperature (30, 45, and 60 degrees Celsius), voltage (2, 2.2, and 2.4 volts), and acid concentration (1, 2, and 3 M), Design of... 

    Hydro-purification of crude terephthalic acid using palladium catalyst supported on multi-wall carbon nanotubes

    , Article Journal of Industrial and Engineering Chemistry ; 2015 ; ISSN: 1226086X Tourani, S ; Khorasheh, F ; Rashidi, A. M ; Safekordi, A. A ; Sharif University of Technology
    Abstract
    Palladium catalysts supported on functionalized multi-wall carbon nanotubes were synthesized for hydro-purification of crude terephthalic acid containing 2100ppm 4-carboxybenzaldehyde (4-CBA) as impurity. PdCl2 and Pd(OAc)2 were used as precursors. Palladium loadings were 0.05 to 0.6wt.% with catalysts reduced at 200 to 400°C. Catalysts prepared from both precursors with least 0.3wt.% palladium resulted in 99%+ removal of 4-CBA. The most desired selectivity was obtained for the catalyst with PdCl2 as precursor, reduction temperature of 300°C, and palladium loading of 0.3wt.%. This catalyst had slightly better performance than the commercial catalyst (0.5wt.% of palladium on activated carbon)... 

    Superparamagnetic zinc ferrite spinel-graphene nanostructures for fast wastewater purification

    , Article Carbon ; Vol. 69 , April , 2014 , pp. 230-238 ; ISSN: 00086223 Meidanchi, A ; Akhavan, O ; Sharif University of Technology
    Abstract
    Superparamagnetic ZnFe2O4/reduced graphene oxide (rGO) composites containing ZnFe2O4 nanoparticles (with ∼5-20 nm sizes) attached onto rGO sheets (with ∼1 μm lateral dimensions) were synthesized by hydrothermal reaction method. By increasing the graphene content of the composite from 0 to 40 wt%, the size as well as the number of the ZnFe2O4 nanoparticles decreased and the saturated magnetization of the composites reduced from 10.2 to 1.8 emu/g, resulting in lower responses to external magnetic fields. Concerning this, the time needed for 90% separation of ZnFe2O4/rGO (40 wt%) composite from its solution (2 mg/mL in ethanol) was found 60 min in the presence of an external magnetic field (∼1... 

    Surveying the jagorood river's self-purification

    , Article 6th International Conference on Environmental Informatics, ISEIS 2007 ; 21-23 November , 2014 Nazari-Alavi, A ; Mirzai, M ; Sajadi, S. A. A ; Alamolhoda, A. A ; Sharif University of Technology
    Abstract
    the development and enlargement of city structure has caused the environmental problems on watershed of Latian dam which is one of the drinking water resourses of Tehran. The enlargement of Lavasan town and existence of an army garrison that it's effluents of treatment plant discharge to this river necessitate a water quality surveillance in entrance area of the dam. The present research includes the survey of this river's self-purification in the mentioned-above area. Numerical analysis is used in different methods to explain self- purification. Frist, we have the numerical analysis and analytical methods for a known sample in order to determine the accuracy and deviation between two... 

    Optimization of culture medium and modeling of curdlan production from Paenibacillus polymyxa by RSM and ANN

    , Article International Journal of Biological Macromolecules ; Vol. 70, issue , Jul , 2014 , p. 463-473 Rafigh, S. M ; Yazdi, A. V ; Vossoughi, M ; Safekordi, A. A ; Ardjmand, M ; Sharif University of Technology
    Abstract
    Paenibacillus polymyxa ATCC 21830 was used for the production of curdlan gum for first time. A Box-Behnken experimental design was applied to optimize six variables of batch fermentation culture each at three levels. Statistical analyses were employed to investigate the direct and interactive effects of variables on curdlan production. Optimum cultural conditions were temperature (50. °C), pH (7), fermentation time (96. h), glucose (100. g/L), yeast extract (3. g/L) and agitation speed (150. rpm). The yield of curdlan production was 6.89. g/L at optimum condition medium. Response surface methodology (RSM) and artificial neural network (ANN) were used to model cultural conditions of curdlan... 

    Solvent-free synthesis of 3-benzylpyrano[3,2-c]pyran/chromene-2,5-diones via tandem reaction of 4-hydroxy-6-methyl-pyran-2-one and 4-hydroxycoumarin with Baylis-Hillman adduct acetates

    , Article Scientia Iranica ; Vol. 21, issue. 3 , 2014 , p. 735-741 ; 1026-3098 ; 2345-3605 Matloubi Moghaddam, F ; Koushki Foroushani, B ; Lotfi Kalahroodi, E ; Sharif University of Technology
    Abstract
    4-hydroxycoumarin 2a and 4-hydroxy-6-methyl-pyran-2-one 2b were applied in a one-pot reaction with Baylis-Hillman adduct acetates 1 to form novel 3-benzylpyrano [3, 2-c] pyran-2, 5-diones 3 in high yields (70-85%). The synthesized framework is available in many biologically active moieties. The reaction was carried out under different conditions to achieve optimum conditions. The results indicated that Et3N, as a base under solvent-free conditions, was optimum. The reaction procedure and purification method are mild and straightforward  

    A web-based methodology for convergent product fuzzy networks using the Steiner tree

    , Article Journal of Industrial and Production Engineering ; Volume 30, Issue 7 , 2013 , Pages 415-432 ; 21681015 (ISSN) Hassanzadeh, R ; Mahdavi, I ; Mahdavi Amiri, N ; Sharif University of Technology
    2013
    Abstract
    An important manufacturing technology spectrum is to consider rapid and sensitive assemblies through convergent product (CP) in digital environment. We integrate functions and sub-functions using a comprehensive mathematical optimization process. To form the CP, a web-based fuzzy network is considered in which a collection of base functions and sub-functions configure the nodes and each arc in the network is to be a link between two nodes. The aim is to find an optimal tree of functionalities in the network adding value to the product in the web environment. First, a purification process is performed in the product network to assign the links among bases and sub-functions. Then, fuzzy... 

    Removal of toxic heavy metal ions from waste water by functionalized magnetic core-zeolitic shell nanocomposites as adsorbents

    , Article Environmental Science and Pollution Research ; Volume 20, Issue 6 , 2013 , Pages 3900-3909 ; 09441344 (ISSN) Padervand, M ; Gholami, M. R ; Sharif University of Technology
    2013
    Abstract
    Functionalized magnetic core-zeolitic shell nanocomposites were prepared via hydrothermal and precipitation methods. The products were characterized by vibrating sample magnetometer, X-ray powder diffraction, Fourier transform infrared spectroscopy, nitrogen adsorption-desorption isotherms, and transmission electron microscopy analysis. The growth of mordenite nanocrystals on the outer surface of silica-coated magnetic nanoparticles at the presence of organic templates was well approved. The removal performance and the selectivity of mixed metal ions (Pb2+ and Cd2+) in aqueous solution were investigated via the sorption process. The batch method was employed to study the sorption kinetic,... 

    Bimodal electricity generation and aromatic compounds removal from purified terephthalic acid plant wastewater in a microbial fuel cell

    , Article Biotechnology Letters ; Volume 35, Issue 2 , 2013 , Pages 197-203 ; 01415492 (ISSN) Marashi, S. K. F ; Kariminia, H. R ; Savizi, I. S. P ; Sharif University of Technology
    2013
    Abstract
    Wastewater of purified terephthalic acid (PTA) from a petrochemical plant was examined in a membrane-less single chamber microbial fuel cell for the first time. Time course of voltage during the cell operation cycle had two steady phases, which refers to the fact that metabolism of microorganisms was shifted from highly to less biodegradable carbon sources. The produced power density was 31.8 mW m-2 (normalized per cathode area) and the calculated coulombic efficiency was 2.05 % for a COD removal of 74 % during 21 days. The total removal rate of different pollutants in the PTA wastewater was observed in the following order: (acetic acid) > (benzoic acid) > (phthalic acid) > (terephthalic... 

    Partitioning of alkaline protease from Bacillus licheniformis (ATCC 21424) using PEG-K2HPO4 aqueous two-phase system

    , Article Fluid Phase Equilibria ; Volume 337 , January , 2013 , Pages 1-5 ; 03783812 (ISSN) Yavari, M ; Pazuki, G. R ; Vossoughi, M ; Mirkhani, S. A ; Seifkordi, A. A ; Sharif University of Technology
    2013
    Abstract
    An aqueous two-phase system (ATPS) containing polyethylene glycol (PEG) and potassium phosphate (K2HPO4) was used for partitioning and partial purification of alkaline protease produced by Bacillus licheniformis ATCC 21424. The effect of PEG molar mass, pH and concentration of NaCl salt addition on partition coefficient, yield and purification factor (PF) for ATPS were studied. The highest partition coefficient (5.3) was achieved in an ATPS of 25% (w/w) PEG 10,000 (g/mol) and 10% (w/w) NaCl at pH 9. Cation and anion exchange chromatography was employed for purification of alkaline protease from protein mixture and the yield and PF for enzyme fractions were obtained to make a comparison... 

    Hydrogen management in refineries

    , Article Petroleum and Coal ; Volume 54, Issue 4 , 2012 , Pages 357-368 ; 13377027 (ISSN) Rabiei, Z ; Sharif University of Technology
    2012
    Abstract
    Environmental restrictions, new transportation fuel specifications, and increased processing of heavier more-sour curds are leading substantial increases in refinery hydrogen consumption for hydrodesulfurisation, aromatic and olefin saturation and improvement of product quality and reduces in refinery hydrogen production from catalytic reformers as a by-product. Therefore above factors make hydrogen management, a critical issue. Generating, recovering and purchasing of hydrogen have significant impact on refinery operating costs. More importantly, overall refinery operations, may be constrained by the availability of hydrogen. Primary consideration, however, should be given to the recovery... 

    Separation of Re and Mo from roasting-dust leach-liquor using solvent extraction technique by TBP

    , Article Separation and Purification Technology ; Volume 86 , February , 2012 , Pages 143-148 ; 13835866 (ISSN) Keshavarz Alamdari, E ; Darvishi, D ; Haghshenas, D. F ; Yousefi, N ; Sadrnezhaad, S. K ; Sharif University of Technology
    Abstract
    Re/Mo separation is studied by a new solvent extraction technique which is based on extraction mechanisms of the constituent metals. Based on McCabe-Thiele plots, a flow diagram has been proposed for separation and purification of Re over Mo. Re-recovery section of the diagram shows that Re is extracted when major amount of Mo is removed. For removal of the remained Mo, a two-stage extraction is required at pH = 2 and V a/V o = 1. In order to obtain Re, the resulted aqueous phase is stripped by adding sulfuric acid. According to the results, while more Re is extracted at less pH, optimum extraction of Mo happens at pH = 1.2. Re selectivity over Mo maximizes by approaching of the pH to zero  

    Upgrading activated sludge systems and reduction in excess sludge

    , Article Bioresource Technology ; Volume 102, Issue 22 , November , 2011 , Pages 10327-10333 ; 09608524 (ISSN) Hazrati, H ; Shayegan, J ; Sharif University of Technology
    2011
    Abstract
    Most of 200 Activated Sludge Plant in Iran are overloaded and as a result, their efficiency is low. In this work, a pilot plant is manufactured and put into operation in one of the wastewater treatment plants in the west of Tehran. Instead of conventional activated sludge, a membrane bioreactor and an upflow anaerobic sludge blanket reactor used as a pretreatment unit in this pilot. For the sake of data accuracy and precision, an enriched municipal wastewater was opted as an influent to the pilot. Based on the attained result, the optimum retention time in this system was 4. h, and the overall COD removal efficiency was 98%. As a whole, the application of this retrofit would increase the...