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تقریب تشابه شبکههای تعامل پروتئین - پروتئین از طریق نمونهبرداری
ناصری، شروین Naseri, Shervin
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تقریب تشابه شبکههای تعامل پروتئین - پروتئین از طریق نمونهبرداری
پدیدآور اصلی :
ناصری، شروین Naseri, Shervin
ناشر :
صنعتی شریف
سال انتشار :
1400
موضوع ها :
بر هم کنش پروتئین - پروتئین Protein-Protein Interaction برآورد Estimation ویژگی های...
شماره راهنما :
19-54487
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Contents
(7)
List of Figures
(9)
1 Introduction
(15)
2 Continuum Model of Lipid Membranes
(20)
2.1 Introduction
(20)
2.2 Stretching and Compression
(21)
2.3 Shearing
(22)
2.4 Bending
(22)
2.4.1 Curvatures of a Surface
(22)
2.4.2 Monge Description
(24)
3 Molecular Dynamics Method for Coarse Grained Model of Lipid Membranes
(26)
3.1 Introduction
(26)
3.2 Lipid and Protein Models
(27)
3.3 Simulation Setup
(29)
4 Dynamical Properties of Lipid Membranes
(32)
4.1 Introduction
(32)
4.2 Clustering of Protein Inclusions in Lipid Bilayers
(33)
4.3 Friction Coefficient
(35)
4.3.1 Lipid Bilayer without Proteins
(40)
4.3.2 Lipid Bilayer with Protein Inclusions
(43)
4.4 Tilt Angle
(46)
4.5 Diffusion in Membranes
(47)
4.5.1 Diffusion coefficients and exponent
(50)
4.5.2 Diffusion of Lennard-Jones fluid
(51)
4.5.3 Diffusion of lipids
(52)
4.5.4 Diffusion of proteins
(55)
4.6 Conclusion
(62)
5 Stability of Suspension flows
(64)
5.1 Introduction
(64)
5.2 Governing diffusion and momentum equations
(66)
5.2.1 Steady-state solutions
(68)
5.2.2 Perturbed equations and eigenvalue problem
(71)
5.3 Long-lived and unstable modes
(75)
5.4 Conclusions
(80)
6 Membrane in Shear Flow: Continuum Approach
(81)
6.1 Introduction
(81)
6.2 Governing Momentum and diffusion equations
(83)
6.3 Perturbed equations and eigenvalue problem
(87)
6.4 Results
(91)
6.5 Conclusions
(94)
References
(96)