Sharif Digital Repository

Due to the overall progress in the processing of imaging tissue cells, the identification and diagnosis of complex diseases using machine learning methods has become very important. Recognizing cell characteristics such as size, shape, and chromatin design is essential in determining cell type, which can be achieved through learning methods such as deep network training. Finding the nucleus or cytoplasm of cells in medical images is a small but significant part of a long process of diagnosing and treating diseases. Today, artificial intelligence has rushed to the aid of experts in this field and has increased the speed and accuracy of experts in finding these cells and their nuclei. This... 

Cardiovascular diseases are the leading cause of death globally so early diagnosis of them is important. Many researchers focused on this field. First signs of cardiac diseases appear in the electrocardiogram signal. This signal represents the electrical activity of the heart so it’s primarily used for the detection and classification of cardiac arrhythmias. Permanent monitoring of this signal is not possible for specialists so we should do this by means of Artificial Intelligence. In this thesis, we use recurrent neural networks to classify electrocardiogram’s arrhythmias. This deep learning method, use two sources of data to learn from. The first part of data is global for everyone and the... 

Cardiovascular diseases are the first leading cause of death in the world also in IRAN. Early detection of such problems can decrease the costs also can help to cure the patient but it needs continuous monitoring and automated classification of hearbeats. Mobile devices and wearable gadgets are good solutions which can help patients before visiting the doctor.In this research, an algorithm is introduced which with the help of ECG signal detects dangerous myocardial problems. Our approach is using deep learning method which were not considered much before. In the proposed algorithm ECG signal is processed in order to get features and with dimensionality reduction, input of the network gets... 

Cardiovascular disease is one of the leading causes of death and mortality. among these diseases, heart muscle inability, especially acute decompensated heart failure is very common. There are several methods to diagnose and monitor this disease, but a method that is accurate, non-invasive, portable and easy to access and easy to measure without multiple visits to the clinic; Priority for use. Early detection and continuous monitoring of fluid status by measuring the bio-impedance (Bio-Z) measurement of thoracic magnitude or phase is critical in reducing the mortality of chronic heart failure (CHF) patients. In this dissertation, for monitoring chronic heart failure, bio-impedance chips with... 

The purpose of this study is to assess the inhibitory effects of an appropriate nanoparticles loaded with gallic acid on the fibrillation of alpha-synuclein. Alpha-synuclein is a major component of protein plaques in synucleinopathies, particularly Parkinson’s disease. Gallic acid (GA, 3,4,5-trihydroxy benzoic acid) is a well–known small molecule which can inhibit the formation of α-synuclein fibrils. For the process of fibrillation, purified protein was incubated at 37◦C and pH 7.2. Fibrillation was analyzed by the standard fibril methods.after that investigated fabricating of gallic acid trapped in the chitosan nanoparticles and gallic acid loaded in chitosan –coated mesoporous silica... 

Cardiovascular disease is one of the most leading causes of death in the world and one of the common methods for treating such diseases is replacing damaged blood vessels with artificial ones. Electrospinning, which is a method of producing polymer fibers, is one of the best and common methods of producing synthetic vessels. The first goal in this study was to create a suitable structure for fiber production; therefore, first, an electrospinning device and environmental chamber were designed and built. Then, the effect of alternative and uniform flow on the diameter and structure of the fibers was investigated using 15% wt. Polycaprolactone solution. The results of this study showed that the... 

The retina, a photosensitive area in the central nervous system, is delicate and intricate. It is susceptible to degenerative disorders such as age-related macular degeneration (AMD), retinitis pigmentosa (RP), Stargardt disease (SD), and glaucoma. These diseases can lead to severe vision loss and ultimately irreversible blindness by causing destruction or dysfunction of different types of retinal cells. Unfortunately, there are no proven treatment strategies to cure or reverse these degenerative disorders. However, cell transplantation therapies may be an alternative to replace distorted cells and improve an individual's vision. Recent clinical outcomes show that transplanted cells in the... 

Parkinson's disease is a neurodegenerative disorder that affects motor functions. Performing mobility exercises help patients slowing down the progression of the illness and improving symptoms of the disease. Assessment and evaluation of activities of mobility exercises are critical for any treatment program particularly in tele-rehabilitation system. The purpose of the current study is to design an affordable and accurate wearable device with inertial measurement units (IMUs) for mobility activity recognition in Parkinson’s patients. The optimum number and arrangement (i.e. configuration) were found to minimize the cost while maintaining a fair accuracy. The activity recognition was... 

Kidney stone disease is one of the diseases that a large number of people experience each year.A Common method for the treatment of kidney stone is the use of acoustic waves, which have attracted the attention of doctors in recent decades. Because of the different structure of kidney stones, the waves transmitted to break these stones are usually performed at different frequencies. Most kidney stones are calcium that can be broken down by using acoustic wave frequencies in the range of 40-20 KHz. Most available lithotripters for the treatment of percutaneous nephrolithotomy (PCNL) are two types: Pneumatic and piezoelectric lithotripters. The lithotripter in this thesis is a piezoelectric... 

This project aims to design a drug to fight leukemia and some autoimmune diseases having few side effects. These drugs are composed of natural sugar and amino acid structures. Among the various treatments available, drug structures as inhibitors of enzymes involved in cancer-related cellular processes is an important treatment. Methotrexate is one of the most widely used anticancer drugs in the last half-century and treats leukemia and many autoimmune diseases such as psoriasis. It is a derivative of folic acid (vitamin B9) and one of the drugs with specific properties. It is an anti-folate whose anti-metabolic effects can help kill cancer cells. One of the problems with using this drug to... 

In this study, a practical approach for robotic beating heart surgery was proposed. This approach eliminates lateral movements of the heart and compensates for normal heart movement by using 1 DOF heart stabilizer and 1 DOF heart compensator simultaneously. It is a compromise between complete fixation of the heart, which damages the heart tissue, on one hand and complex and impractical compensation of the free heart movement on the other. One of the core components of the proposed system is the slave robot, which includes a 1 DOF compensator and a 4 DOF tool holder robot. Based on the selected laparoscopic tool, a modified agile-eye mechanism for activating the wrist was introduced,... 

In the past few years, the available knowledge in graph-based processing has made significant progress, and as a result, powerful tools have been created. In this regard, graph learning with the assumption of data smoothness on the final result can be considered a successful example. Briefly, in graph learning, to describe the relationship between the problem components, a graph is learned using the available data whose nodes represent the problem components, and its edges represent how much these components are connected. The usefulness of this method lies in the possibility of using the obtained graph as the input to currently known methods of classification and achieving better results... 

Networks and the epidemiology of directly transmitted infectious diseases are fun-damentally linked. The foundations of epidemiology and early epidemiological models were based on population wide random-mixing, but in practice each individual has a finite set of contacts to whom they can pass infection; the ensemble of all such contacts forms a network. Knowledge of the structure of the network allows models to compute the epidemic dynamics at the population scale from the individual-level behaviour of infections.Motivated by the analysis of social networks, we study a model of random net-works that has both a given degree distribution and a tunable clustering coefficient.We consider two... 

The highly developed biological data collection methods enable scientists to capture protein-protein interaction (PPI) in the human body, which could be analyzed as biological networks such as protein-protein interaction networks. These networks reveal essential information about the biological process in human cells and can be used to identify genes associated with cancers. Effectively identifying disease-related genes would contribute to improving the treatment and diagnosis of various diseases. Current methods for identifying disease-related genes mainly focus on the hypothesis of guilt-by-association and do not consider the global information in the PPI network. Besides, most methods pay... 

Recent studies of brain activities indicate that Phase-Amplitude Coupling (PAC) between several regions of the brain, are meaningfully related to Parkinson’s Disease. In this research, we have studied PAC as a statistical measure in Parkinsonian patients’ brains while Deep Brain Stimulation treatment with different stimulation frequencies are being applied. In order to do so, we have investigated patients’ brain signals, and estimated PAC between regions of interest; afterwards, by using the estimated PAC values, we have found significant effects of the treatments on parkinsonian brains; furthermore, two treatments that are using 130 Hz and 340 Hz stimuli signals are compared. In this... 

Atherosclerosis is one of the most important factors for mortality and morbidity in the world. Coronary artery bypass graft (CABG) is applied for treatment of this disease which in this surgery, the patient vessels, such as internal thoracic artery and saphenous vein, are harvested and grafted to the coronary arteries. The graft success and its performance in short and long-term are depended on the much factors e.g. the severity of stenosis in the coronary artery. It should be noted that the low level of stenosis in the coronary artery causes the creation of undesirable phenomenon of competitive flow in the grafts after the surgery which this phenomenon has been reported as a cause of graft... 

The ongoing Covid-19 pandemic has driven our attention to a simulation of virus dispersion to complete our understanding of airborne transmission. A myriad of studies have shown that respiratory diseases such as MERS, SARS, and COVID-19 can be transmitted by virus-laden droplets released during coughs, sneezing, and normal breathing. To mitigate and prevent the spread of such infectious diseases, investigation of the transmission routes is of great importance. This study has been fueled to harness the CFD tool to simulate the virus-laden droplets dispersion in hospitals inwards. Because of the limitations intertwined with experimental works such as the risk of infection of experimenters, and... 

Atherosclerosis, due to the penetration of low-density lipoprotein particles (LDL) into the arterial wall, is one of the most common and death-leading diseases in today's world. Due to its importance, extensive research has been conducted on the factors that affect this disease. In this thesis, a numerical study of the effects of Wall Shear Stress (WSS), non-Newtonian behavior of blood, different hematocrit values, and blood pressure on LDL permeation through the artery wall layers are investigated in a 4-layer wall model of a coronary bifurcation. To obtain the velocity and concentration fields in the domain, momentum, Brinkman, and mass transport equations are solved in the lumen and wall... 

Renal diseases and consequently kidney failure is one of the important death factors around the world in recent years. It causes hundreds of thousands die every year and is in progress. Researchers believe that increasing chemical and nonchemical materials density in the blood which is the air pollution, use of tobacco and other parameters cause renal cells misfunction in urine filtration and regulation of blood pressure. The goal of this work is design and fabrication of a microfluidic device which provides different cell types to be cultured and imposed pressure. To do this, a high throughput microfluidic device is needed to mimic kidney biologically. Having such a device helps to analyze... 

Parkinson's disease is the most common progressive neurological disorder after Alzheimer, which is associated with motor disabilities. One of the most effective ways to improve patient’s condition with this disease, is rehabilitation.Assessment of the patient during rehabilitation is very important in order to give a better understanding of patient's status to the specialist, but qualitative assessment methods in traditional rehabilitation are ineffective in fast and accurate evaluation of the patient's condition; and because of their need for patient’s attendance in clinic, they will incur huge medical costs. Therefore, the purpose of the present study is to present a quantitative method to...